Publications

Calendar Year 2024 Publications (including submitted manuscripts under review)

  1. Bone, S.; Andersen, A.;  You, S.; Boye, K.; Sarangi,R. (2024) Towards a model of calcium-organic matter complexation using molecular dynamics and ab initio density functional theory. TBD.  To be submitted.
  2. Kumar, N.; Noël, V.; Boye, K.; Kumar, N.; Fendorf, S.;     Boye, K.; Noël, V. (2024)  Mobilization and bioavailability of metallic trace elements in soils and sediments: Appreciating spatiotemporal redox heterogeneities.  ACS Earth and Space Chemistry.  To be submitted.         
  3. Wang, L.; Babey, T.; Perzan, Z.; Pierce, S.; Briggs, M.; Rogers, B.; Bargar, J. R.; Boye, K.; Cares, J.; Maher, K. (2024) Revealing beavers’ influence on flow dynamics: Hydrologic modeling and calibration in an intermountain floodplain aquifer. Water Resources Research. Submitted.
  4. Tolar, B.; Kilpatrick, S-M.; Dewey, C.; Fendorf, S.; Bargar, J.R.; Francis, C. A. (2024) Linking microbial community structure to hydrogeochemical shifts within floodplain subsurface sediments along the Slate River, Colorado. Journal TBD. To be submitted. 
  5. Stegen, J.; Burgin, A.; Busch, M.; Fisher, J.; Ladau, J.; Abrahamson, J.; Kinsman-Costello, L.; Li, L.; Chen, X.; Datry, T.; McDowell, N.; Tatariw, C.; Braswell, A.; Deines, J.; Guimond, J.; Regier, P.; Rod, K.; Bam, E.; Fluet-Chouinard, E.; Forbrich, I.; Jaeger, K.; O'Meara, T.; Scheibe, T.; Seybold, E.; Sweetman, J.; Zheng, J.; Allen, D.; Herndon, E.; Middleton, B.; Painter, S.; Roche, K.; Scamardo, J.; Vander Vorste, R.; Boye, K.; Wohl, E.; Zimmer, M.; Hondula, K.; Laan, M.; Marshall, A.; Patel, K. (2024) Reviews and Syntheses: Variable Inundation Across Earth’s Terrestrial Ecosystems, EGUsphere  [preprint], https://doi.org/10.5194/egusphere-2024-98
  6. Babey, T.; Perzan, Z.; Pierce, S.; Rogers, B.; Wang, L.; Carroll, R.W.H.; Bargar, J.R.; Boye, K.; Maher, K. (2024) Mountainous Floodplain Connectivity in Response to Hydrological Transitions. Water Resources Research, 60, e2024WR037162. https://doi.org/10.1029/2024WR037162
  7. Rasmussen, A.N.; Tolar, B.B.; Bargar, J.N.; Boye, K.; Francis, C.A. (2024) Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO USA. mSystems. 9:e00314-24. https://doi.org/10.1128/msystems.00314-24
  8. Rushworth, D.D.; Noël, V.; Kumar, N.; Dewulf, J.; van Helmond, N.A.G.M.; Slomp, C.P.;    Lehmann,        M.F.; Schenkeveld, W.D.C.;  Kraemer, S.M. (2023) Solid phase speciation controls copper mobilisation from marine sediments by methanobactin. Sci Total Environ, 934, 173046. DOI: https://doi.org/10.1016/j.scitotenv.2024.173046
  9. Zheng, J.; Sheibe, T.; Boye, K.; Song, H-S. (2024) Thermodynamic control on the decomposition of organic matter across different electron acceptors. Soil Biology and Biochemistry, 193, 109364. DOI: https://doi.org/10.1016/j.soilbio.2024.109364
  10. Spielman-Sun, E.; Boye, K.; Dwivedi, D.; Engel, M.; Kumar, N.; Thompson, A.; Noël, V. (2024) A critical look at colloid generation, stability and mobility in redox environments: challenges and perspectives. ACS Earth and Space Chemistry, 8 (4), 630-653. DOI: https://doi.org/10.1021/acsearthspacechem.3c00255
  11. Hu, X. ; Chen, C.; Chen, D.; Noël, V.; Oji, H.; Ghoshal, S.; Lowry, G.V.; Tratnyek, P.G.; Lin, D.; Zhu, L.; Xu, J. (2024) Lattice engineered nanoscale Fe0 for selective reductions. Nat Water 2, 84–92. DOI: https://doi.org/10.1038/s44221-023-00175-5
  12. Janot, N.; Noël,V.; Dunham-Cheatham, S.M.; Lezama Pacheco, J.S.; Cerrato, J.M.; Alessi,             D.S.; Lee, E.; Pham, D.Q.; Suvorova, E.;  Bernier-Latmani, R.; Giammar, D.E.; Williams, K.H.; Long, P.E.; Bargar, J.R. (2024) Reducing conditions influence U(IV) accumulation in sediments during in situ bioremediation.     ACS Earth and Space Chemistry. Published. DOI: https://doi.org/10.1021/acsearthspacechem.3c00271
  13. Noël, V.; Boye, K.; Naughton, H.;  Lacroix, E.; Aeppli, M.; Kumar, N.; Fendorf, S.; Webb, S. (2024)  X-ray chemical imaging for assessing redox microsites within soils and sediments.    Frontiers in Environmental Chemistry, 5  DOI: 10.3389/fenvc.2024.1329887

Calendar Year 2023 Publications

  1. Spielman-Sun, E.; Bland, G.;  Wielinski, J.;  Frouté, L.; Kovscek, A. R.;  Lowry, G. V.;  Bargar, J. R.; Noël, V. (2023) Environmental impact of solution pH on the formation and migration of iron colloids in deep subsurface energy systems. Sci Total Environ, 166409. DOI: https://doi.org/10.1016/j.scitotenv.2023.166409 
  2. Lacroix, E. M.; Aeppli, M.; Boye, K.; Brodie, E.; Fendorf, S.; Keiluweit, M.; Naughton, H. R.; Noël, V.; Sihi, D. (2023) Consider the anoxic microsite: Acknowledging and appreciating spatiotemporal redox heterogeneity in soils and sediments. ACS Earth and Space Chemistry. DOI: https://doi.org/10.1021/acsearthspacechem.3c00032
  3. Engel, M.; Noël, V.; Pierce, S.; Kovarik, L.; Kukkadapu, R. K.; Pacheco, J. S. L.;  Qafoku, O.;  Runyon, J. R.;  Chorover, J.;  Zhou, W.;  Cliff, J.;  Boye, K.; Bargar, J. R. (2023) Structure and composition of natural ferrihydrite nano-colloids in anoxic groundwater. Water Research, 238, 119990. DOI: https://doi.org/10.1016/j.watres.2023.119990  
  4. Dewey, C.; Juillot, F.; Fendorf, S.; Bargar, J. R. (2023) Seasonal oxygenation of contaminated floodplain soil releases Zn to porewater. Environmental Science & Technology. 57(12), 4841-4851. DOI: https://doi.org/10.1021/acs.est.2c08764 
  5. Perzan, Z.; Chapin, T. (2023) WellSTIC: A cost-effective sensor for performing point dilution tests to measure groundwater velocity in shallow aquifers. Water Resour Res, 59 (1), e2022WR033223. DOI: https://doi.org/10.1029/2022WR033223  
  6. Juillot, F.; Noël, V.; Louvat, P.; Gelabert, A.; Jouvin, D.; Göttlicher, P. J.; Belin, S.; Müller, B.; Morin, G.; Voegelin, A. (2023) Can Zn isotope in sediments record past eutrophication of freshwater lakes? A pilot study at Lake Baldegg (Switzerland). Chem Geol, 121321. DOI: https://doi.org/10.1016/j.chemgeo.2023.121321  

Calendar Year 2022 Publications 

  1. Baya, C.;  Le Pape, P.;  Baptiste, B.;  Menguy, N.;  Delbes, L.;  Morand, M.;  Rouelle, M.;  Aubry, E.;  Ona-Nguema, G.;  Noël, V.;  Juillot, F.; Morin, G. (2022) A methodological framework to study the behavior and kinetic influence of V, Mn, Co, Ni, Cu, Zn, As, Se and Mo during pyrite formation via the polysulfide pathway at ambient temperature. Chem Geol, 613, 121139. DOI: https://doi.org/10.1016/j.chemgeo.2022.121139  
  2. Engel, M.; Noël, V.; Kukkadapu, R. K.; Boye, K.; Bargar, J. R.; Fendorf, S. (2022) Nitrate controls on the extent and type of metal retention in fine-grained sediments of a simulated aquifer. Environmental Science & Technology, 56 (20), 14452-14461. DOI: https://doi.org/10.1021/acs.est.2c03403  
  3. Crystal-Ornelas, R.;  Varadharajan, C.;  O’Ryan, D.;  Beilsmith, K.;  Bond-Lamberty, B.;  Boye, K.;  Burrus, M.;  Cholia, S.;  Christianson, D. S.;  Crow, M.;  Damerow, J.;  Ely, K. S.;  Goldman, A. E.;  Heinz, S. L.;  Hendrix, V. C.;  Kakalia, Z.;  Mathes, K.;  O’Brien, F.;  Pennington, S. C.;  Robles, E.;  Rogers, A.;  Simmonds, M.;  Velliquette, T.;  Weisenhorn, P.;  Welch, J. N.;  Whitenack, K.; Agarwal, D. A.(2022) Enabling FAIR data in Earth and environmental science with community-centric (meta)data reporting formats. Scientific Data, 9 (1), 700. DOI: https://doi.org/10.1038/s41597-022-01606-w 
  4. Kumar, N.; Noël, V.; Besold, J.; Planer-Friedrich, B.; Boye, K.; Fendorf, S.; Brown, G. E., Jr. (2022) Mechanism of arsenic partitioning during sulfidation of As-sorbed ferrihydrite nanoparticles. ACS Earth and Space Chemistry, 6 (7), 1666-1673. DOI: https://doi.org/10.1021/acsearthspacechem.1c00373  
  5. Fox, P. M.;  Carrero, S.;  Anderson, C.;  Dewey, C.;  Keiluweit, M.;  Conrad, M.;  Naughton, H. R.;  Fendorf, S.;  Carroll, R.;  Dafflon, B.;  Malenda-Lawrence, H.;  Dwivedi, D.;  Gilbert, B.;  Christensen, J. N.;  Boye, K.;  Beutler, C.;  Brown, W.;  Newman, A.;  Versteeg, R.;  Williams, K. H.; Nico, P. S. (2022) Sulfur biogeochemical cycling and redox dynamics in a shale-dominated mountainous watershed. Journal of Geophysical Research: Biogeosciences, 127 (6), e2021JG006769. DOI: https://doi.org/10.1029/2021JG006769  
  6. Babey, T.; Boye, K.; Tolar, B.; Engel, M.; Noël, V.; Perzan, Z.; Kumar, N.; Francis, C A..; Bargar, J. R.; Maher, K. (2022) Simulation of anoxic lenses as exporters of reactivity in alluvial sediments. Geochimica et Cosmochimica Acta, 334, 119-134 DOI: https://doi.org/10.1016/j.gca.2022.07.018  
  7. Merrot, P.; Juillot, F.; Flipo, L.; Tharaud, M.; Viollier, E.; Noël, V.; Le Pape, P.; Fernandez, J.-M.; Moreton, B.; Morin, G. (2022) Bioavailability of chromium, nickel, iron and manganese in relation to their speciation in coastal sediments downstream of ultramafic catchments: A case study in New Caledonia. Chemosphere, 302, 134643. DOI: https://doi.org/10.1016/j.chemosphere.2022.134643  
  8. Chardi, K.; Satpathy, A.; Schenkeveld, W.; Kumar, N.; Noël, V.; Kraemer, S.; Giammar, D. (2022) Ligand-induced U mobilization from chemogenic uraninite and biogenic non-crystalline U(IV) under anoxic conditions. Environmental Science & Technology, 56 (10), 6369-6379. DOI: https://doi.org/10.1021/acs.est.1c07919  
  9. Aeppli, M.;  Babey, T.;  Engel, M.;  Lacroix, E. M.;  Tolar, B..;  Fendorf, S.;  Bargar, J. R.; Boye, K. (2022) Export of organic carbon from reduced fine-grained zones governs biogeochemical reactivity in a simulated aquifer. Environmental Science & Technology, 56 (4), 2738-2746. DOI: https://doi.org/10.1021/acs.est.1c04664  

Calendar Year 2021 Publications

  1. Reji, L.; Cardarelli, E.L.; Boye, K.; Bargar, J.R.; Francis, C.A. (2021) Diverse ecophysiological adaptations of subsurface Thaumarchaeota in floodplain sediments revealed through genome-resolved metagenomics. The ISME journal, 16, 1140–1152. DOI: https://doi.org/10.1038/s41396-021-01167-7
  2. Crystal-Ornelas, R., Varadharajan, C., Bond-Lamberty, B., Boye, K., Burrus, M., Cholia, S., Crow, M., Damerow, J., Devarakonda, R., Ely, K. S., Goldman, A., Heinz, S., Hendrix, V., Kakalia, Z., Pennington, S., Robles E., Rogers, A., Simmonds, M., Velliquette, T., Weierbach, H., Weisenhorn, P., Welch, J. N., Agarwal, D. A. (2021) A guide to using GitHub for developing and versioning data standards and reporting formats. Earth and Space Science, 8 (8), e2021EA001797. DOI: https://doi.org/10.1029/2021EA001797
  3. Cervi, E.C.; Clark, S.; Boye, K.; Gustafsson, J.P.; Baken, S.; Burton, G.A. Jr. (2021) Copper transformation, speciation, and detoxification in anoxic and suboxic freshwater sediments. Chemosphere, 282, 131063. DOI:  https://doi.org/10.1016/j.chemosphere.2021.131063
  4. Perzan, Z.; Babey, T.; Caers, J.; Bargar, J. R.; Maker, K. (2021) Local and global sensitivity analysis of a reactive transport model simulating floodplain redox cycling. Water Resources Research, 57 (12), e2021WR029723. DOI: https://doi.org/10.1029/2021WR029723
  5. Le Traon C.; Aquino, T.; Maher K.; Le Borgne T. (2021) Effective kinetics driven by dynamic concentration gradients under coupled transport and reaction. Geochimica et Cosmochimica Acta, 306, 189-209. DOI: https://doi.org/10.1016/j.gca.2021.04.033
  6. Noël, V.; Kumar, N.; Boye, K.; Lezama-Pacheco, J. S.; Brown, G. E.; Bargar, J. R. (2021) Reply to the Comment on “FeS colloids – formation and mobilization pathways in natural waters” by S. Peiffer, D0EN00967A. Environmental Science: Nano, 8 (6), 1817-1821. DOI: https://doi.org/10.1039/D1EN00278C
  7. Baya C., Le Pape P., Baptiste B., Brest J., Landrot G., Elkaïm E., Noël V., Blanchard M., Ona-Nguema G., Juillot F, Morin G. (2021) Influence of trace level As or Ni on pyrite formation kinetics at low temperature. Geochimica et Cosmochimica Acta, 300, 333-353. DOI: https://doi.org/10.1016/j.gca.2021.01.042
  8. Nolan, P.; Bone, S.; Campbell, K. M.; Pan, D.; Healy, O.; Stange, M.; Bargar, J.; Weber, K. A. (2021) Uranium(VI) attenuation in a carbonate-bearing oxic alluvial aquifer. Journal of Hazardous Materials, 412, 125089. DOI: https://doi.org/10.1016/j.jhazmat.2021.125089
  9. Damerow, J.E.; Varadharajan, C.; Boye, K.; Brodie, E.L.; Burrus, M.; Chadwick, K.D.; Crystal-Ornelas, R.; Elbashandy, H.; Alves, R.J.E.; Ely, K.S.; Goldman, A.E.; Haberman, T.; Hendrix, V.; Kakalia, Z.; Kemner, K.M.; Kersting, A.B.; Merino, N.; O’Brien, F.; Perzan, Z.; Robles, E.; Sorensen, P.; Stegen, J.C.; Walls, R.L.; Weisenhorn, P.; Zavarin, M.; Agarwal, D. (2021) Sample identifiers and metadata to support data management and reuse in multidisciplinary ecosystem sciences. Data Science Journal, 20:1–19. DOI: https://doi.org/10.5334/dsj-2021-011
  10. Dewey, C.; Bargar, J.R.; Fendorf, S. (2021) Porewater lead concentrations limited by particulate organic matter coupled with ephemeral iron(III) and sulfide phases during redox cycles within contaminated floodplain soils. Environ. Sci. Techno, 55 (9) 5878-5886. DOI: https://doi.org/10.1021/acs.est.0c08162
  11. Engel, M.; Boye, K.; Noël, V.; Babey, T.; Bargar, J. R.; Fendorf, S. (2021) Simulated aquifer heterogeneity leads to enhanced attenuation and multiple retention processes of zinc. Environmental Science & Technology, 55 (5) 2939–2948. DOI: https://doi.org/10.1021/acs.est.0c06750
  12. Engel M.; Lezama Pacheco J.S.; Noël V.; Boye K.; Fendorf S. (2021) Organic compounds alter preference and rates of heavy metal adsorption on ferrihydrite. Science of the Total Environment, 750, 141485. DOI: https://doi.org/10.1016/j.scitotenv.2020.141485

Calendar Year 2020 Publications 

  1. Bone, S. E.; Cliff, J.; Weaver, K.; Takacs, C. J.; Roycroft, S.; Fendorf, S.; Bargar, J. R. (2020) Uranium complexation by organic matter and clay minerals in anoxic contaminated sediments. Environmental Science & Technology, 54 (3), 1493-1502. DOI: https://doi.org/10.1021/acs.est.9b04741
  2. Cardarelli, E. L.; Bargar, J. R.; Francis, C. A. (2020) Diverse thaumarchaeota dominate subsurface ammonia-oxidizing communities in the Western United States. Microbial Ecology, 80 (4) 778-792. DOI: https://doi.org/10.1007/s00248-020-01534-5
  3. Dewey, C.; Sokaras, D.; Kroll, T.; Bargar, J.R.; Fendorf S. (2020) Calcium-uranyl-carbonato species kinetically limit U(VI) reduction by Fe(II) and lead to U(V)-bearing ferrihydrite. Environ. Sci. Techno, 54 (10) 6021–6030. DOI: https://doi.org/10.1021/acs.est.9b05870
  4. Kumar, N.; Noël, V.; Planer-Friedrich, B.; Besold, J.; Lezama Pacheco, J.; Bargar, J. R.; Brown, J., G.; Fendorf, S.; Boye, K. (2020) Redox heterogeneities promote thioarsenate formation and release into groundwater from low arsenic sediments. Environmental Science & Technology, 54 (6), 3237-3244. DOI: https://doi.org/10.1021/acs.est.9b06502
  5. Meredith, L., Boye, K., Savage, K., Vargas, R. (2020) Formation and fluxes of soil trace gases. Soil Systems, 4, 22. DOI: https://doi.org/10.3390/soilsystems4020022
  6. Tolar, B. B., Boye, K., Bobb, C., Maher, K., Bargar, J. R., & Francis, C. A. (2020) Stability of floodplain subsurface microbial communities through seasonal hydrological and geochemical cycles. Frontiers in Earth Science, 8(338). DOI: https://doi.org/10.3389/feart.2020.00338
  7. Xu, J.; Avellan, A.; Li, H.; Liu, X.; Noël, V.; Lou, Z.; Wang, Y.; Kaegi, R.; Henkelman, G.; Lowry, G. (2020) Sulfur loading and speciation control the hydrophobicity, electron transfer, reactivity, and selectivity of sulfidized nanoscale zerovalent iron., Advanced Materials, 32 (17). DOI: https://doi.org/10.1002/adma.201906910
  8. Noël, V.; Kumar, N.; Boye, K.; Barragan, L.; Lezama-Pacheco, J.; Chu, R. K.; Tolic, N.; Brown Jr., G. E.; Bargar, J. R. (2020) FeS colloids – formation and mobilization pathways in natural waters. Environmental Science: Nano, 7, 2102-2116. DOI: https://doi.org/10.1039/C9EN01427F